Gene
Taestivum Traes 7DS 40BEF81F6
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DS_40BEF81F6 Traes_7DS_40BEF81F6 |
ta_iwgsc_7ds_v1_3962987 | 2216 | 6214 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DS_40BEF81F6.1 Traes_7DS_40BEF81F6.1 PAC:31945392 |
Low | Yes | 1029 | Get ORF Coding potential... Type: noncoding Potential: -0.375 Folding energies... MFEI: -33.042 AMFE: -0.692 GC content %: 47.716 | |
| Taestivum_Traes_7DS_40BEF81F6.2 Traes_7DS_40BEF81F6.2 PAC:31945391 |
Low | No | 893 | Get ORF Coding potential... Type: noncoding Potential: -0.360 Folding energies... MFEI: -30.929 AMFE: -0.675 GC content %: 45.801 | |
| Taestivum_Traes_7DS_40BEF81F6.3 Traes_7DS_40BEF81F6.3 PAC:31945394 |
Low | No | 2070 | Get ORF Coding potential... Type: noncoding Potential: -0.437 Folding energies... MFEI: -32.942 AMFE: -0.685 GC content %: 48.068 | |
| Taestivum_Traes_7DS_40BEF81F6.4 Traes_7DS_40BEF81F6.4 PAC:31945393 |
Low | No | 1074 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -29.590 AMFE: -0.686 GC content %: 43.110 | |
| Taestivum_Traes_7DS_40BEF81F6.5 Traes_7DS_40BEF81F6.5 PAC:31945395 |
Low | No | 503 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -33.121 AMFE: -0.674 GC content %: 49.105 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
