GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DS_72E5AEB00 Traes_7DS_72E5AEB00	ta_iwgsc_7ds_v1_3923258	6949	9724	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DS_72E5AEB00.1 Traes_7DS_72E5AEB00.1 PAC:31947595	High	No	731		Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -34.720 AMFE: -0.630 GC content %: 55.130
Taestivum_Traes_7DS_72E5AEB00.2 Traes_7DS_72E5AEB00.2 PAC:31947596	High	No	356		Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -25.449 AMFE: -0.604 GC content %: 42.135

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).