Gene
Taestivum Traes 7DS 77A9E76D1
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DS_77A9E76D1 Traes_7DS_77A9E76D1 |
ta_iwgsc_7ds_v1_3897384 | 305 | 3676 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DS_77A9E76D1.12 Traes_7DS_77A9E76D1.12 PAC:32009288 |
Low | No | 1323 | Get ORF Coding potential... Type: noncoding Potential: -0.046 Folding energies... MFEI: -29.327 AMFE: -0.712 GC content %: 41.194 | |
| Taestivum_Traes_7DS_77A9E76D1.13 Traes_7DS_77A9E76D1.13 PAC:32009289 |
Low | No | 2230 | Get ORF Coding potential... Type: noncoding Potential: -0.359 Folding energies... MFEI: -28.269 AMFE: -0.674 GC content %: 41.973 | |
| Taestivum_Traes_7DS_77A9E76D1.15 Traes_7DS_77A9E76D1.15 PAC:32009291 |
Low | No | 2551 | Get ORF Coding potential... Type: noncoding Potential: -0.044 Folding energies... MFEI: -29.165 AMFE: -0.660 GC content %: 44.218 | |
| Taestivum_Traes_7DS_77A9E76D1.16 Traes_7DS_77A9E76D1.16 PAC:32009292 |
High | No | 1644 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -30.560 AMFE: -0.678 GC content %: 45.073 | |
| Taestivum_Traes_7DS_77A9E76D1.2 Traes_7DS_77A9E76D1.2 PAC:32009277 |
Low | No | 1315 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -28.570 AMFE: -0.601 GC content %: 47.529 | |
| Taestivum_Traes_7DS_77A9E76D1.3 Traes_7DS_77A9E76D1.3 PAC:32009278 |
High | No | 2435 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -28.895 AMFE: -0.654 GC content %: 44.189 | |
| Taestivum_Traes_7DS_77A9E76D1.5 Traes_7DS_77A9E76D1.5 PAC:32009280 |
High | No | 2221 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -28.208 AMFE: -0.638 GC content %: 44.214 | |
| Taestivum_Traes_7DS_77A9E76D1.8 Traes_7DS_77A9E76D1.8 PAC:32009284 |
Low | No | 2255 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -29.401 AMFE: -0.651 GC content %: 45.188 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
