GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DS_A63427EE8 Traes_7DS_A63427EE8	ta_iwgsc_7ds_v1_3888878	5917	9824	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DS_A63427EE8.1 Traes_7DS_A63427EE8.1 PAC:32000733	Low	No	1055		Get ORF Coding potential... Type: noncoding Potential: -0.365 Folding energies... MFEI: -28.474 AMFE: -0.671 GC content %: 42.464
Taestivum_Traes_7DS_A63427EE8.3 Traes_7DS_A63427EE8.3 PAC:32000732	Low	No	1091		Get ORF Coding potential... Type: noncoding Potential: -0.345 Folding energies... MFEI: -29.322 AMFE: -0.692 GC content %: 42.346
Taestivum_Traes_7DS_A63427EE8.4 Traes_7DS_A63427EE8.4 PAC:32000734	Low	No	1054		Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -28.349 AMFE: -0.670 GC content %: 42.315
Taestivum_Traes_7DS_A63427EE8.5 Traes_7DS_A63427EE8.5 PAC:32000735	High	No	1658		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -29.101 AMFE: -0.702 GC content %: 41.435

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).