Gene
Taestivum Traes 7DS A8A8D774F
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DS_A8A8D774F Traes_7DS_A8A8D774F |
ta_iwgsc_7ds_v1_3939903 | 926 | 4210 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DS_A8A8D774F.1 Traes_7DS_A8A8D774F.1 PAC:31900991 |
Low | No | 2128 | Get ORF Coding potential... Type: noncoding Potential: -0.184 Folding energies... MFEI: -23.445 AMFE: -0.624 GC content %: 37.594 | |
| Taestivum_Traes_7DS_A8A8D774F.4 Traes_7DS_A8A8D774F.4 PAC:31900989 |
Low | No | 2310 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -24.242 AMFE: -0.623 GC content %: 38.918 | |
| Taestivum_Traes_7DS_A8A8D774F.5 Traes_7DS_A8A8D774F.5 PAC:31900990 |
Low | No | 2423 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -24.338 AMFE: -0.637 GC content %: 38.217 | |
| Taestivum_Traes_7DS_A8A8D774F.6 Traes_7DS_A8A8D774F.6 PAC:31900988 |
Low | No | 2396 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -24.687 AMFE: -0.631 GC content %: 39.107 | |
| Taestivum_Traes_7DS_A8A8D774F.7 Traes_7DS_A8A8D774F.7 PAC:31900992 |
Low | No | 2350 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -23.166 AMFE: -0.643 GC content %: 36.000 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
