Gene
Taestivum Traes 7DS A988E3C9B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DS_A988E3C9B Traes_7DS_A988E3C9B |
ta_iwgsc_7ds_v1_3895504 | 6634 | 10685 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DS_A988E3C9B.10 Traes_7DS_A988E3C9B.10 PAC:31891625 |
High | No | 1176 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -28.886 AMFE: -0.657 GC content %: 43.963 | |
| Taestivum_Traes_7DS_A988E3C9B.11 Traes_7DS_A988E3C9B.11 PAC:31891626 |
High | No | 1064 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -27.218 AMFE: -0.652 GC content %: 41.729 | |
| Taestivum_Traes_7DS_A988E3C9B.12 Traes_7DS_A988E3C9B.12 PAC:31891627 |
High | No | 1129 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -28.663 AMFE: -0.640 GC content %: 44.818 | |
| Taestivum_Traes_7DS_A988E3C9B.13 Traes_7DS_A988E3C9B.13 PAC:31891628 |
High | No | 509 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -25.049 AMFE: -0.616 GC content %: 40.668 | |
| Taestivum_Traes_7DS_A988E3C9B.15 Traes_7DS_A988E3C9B.15 PAC:31891630 |
High | No | 1073 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -23.532 AMFE: -0.630 GC content %: 37.372 | |
| Taestivum_Traes_7DS_A988E3C9B.5 Traes_7DS_A988E3C9B.5 PAC:31891619 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -30.138 AMFE: -0.679 GC content %: 44.393 | |
| Taestivum_Traes_7DS_A988E3C9B.6 Traes_7DS_A988E3C9B.6 PAC:31891620 |
High | No | 1155 | Get ORF Coding potential... Type: noncoding Potential: -0.439 Folding energies... MFEI: -28.052 AMFE: -0.667 GC content %: 42.078 | |
| Taestivum_Traes_7DS_A988E3C9B.9 Traes_7DS_A988E3C9B.9 PAC:31891624 |
High | No | 986 | Get ORF Coding potential... Type: noncoding Potential: -0.749 Folding energies... MFEI: -23.945 AMFE: -0.613 GC content %: 39.047 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
