Gene

Taestivum Traes 7DS C3156CCF6

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_7DS_C3156CCF6
Traes_7DS_C3156CCF6
ta_iwgsc_7ds_v1_3931405 4321 7922 Phytozome v2.2 Triticum_aestivum
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_7DS_C3156CCF6.1
Traes_7DS_C3156CCF6.1
PAC:31881364
High No 1702
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -28.261 AMFE: -0.616
GC content
%: 45.887
Taestivum_Traes_7DS_C3156CCF6.10
Traes_7DS_C3156CCF6.10
PAC:31881373
High No 409
Coding potential...
Type: noncoding Potential: -1.380
Folding energies...
MFEI: -21.369 AMFE: -0.662
GC content
%: 32.274
Taestivum_Traes_7DS_C3156CCF6.2
Traes_7DS_C3156CCF6.2
PAC:31881365
High No 1179
Coding potential...
Type: noncoding Potential: -0.989
Folding energies...
MFEI: -30.297 AMFE: -0.590
GC content
%: 51.315
Taestivum_Traes_7DS_C3156CCF6.3
Traes_7DS_C3156CCF6.3
PAC:31881366
High No 1157
Coding potential...
Type: noncoding Potential: -1.081
Folding energies...
MFEI: -30.441 AMFE: -0.592
GC content
%: 51.426
Taestivum_Traes_7DS_C3156CCF6.5
Traes_7DS_C3156CCF6.5
PAC:31881368
High No 1542
Coding potential...
Type: noncoding Potential: -1.135
Folding energies...
MFEI: -28.145 AMFE: -0.625
GC content
%: 45.006
Taestivum_Traes_7DS_C3156CCF6.6
Traes_7DS_C3156CCF6.6
PAC:31881371
High No 1023
Coding potential...
Type: noncoding Potential: -1.033
Folding energies...
MFEI: -30.479 AMFE: -0.602
GC content
%: 50.635
Taestivum_Traes_7DS_C3156CCF6.7
Traes_7DS_C3156CCF6.7
PAC:31881369
High No 1062
Coding potential...
Type: noncoding Potential: -1.041
Folding energies...
MFEI: -29.755 AMFE: -0.582
GC content
%: 51.130
Taestivum_Traes_7DS_C3156CCF6.8
Traes_7DS_C3156CCF6.8
PAC:31881370
High No 1540
Coding potential...
Type: noncoding Potential: -1.108
Folding energies...
MFEI: -27.883 AMFE: -0.620
GC content
%: 45.000
Taestivum_Traes_7DS_C3156CCF6.9
Traes_7DS_C3156CCF6.9
PAC:31881372
High No 737
Coding potential...
Type: noncoding Potential: -1.170
Folding energies...
MFEI: -27.761 AMFE: -0.588
GC content
%: 47.218


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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