Gene
Taestivum Traes 7DS C3156CCF6
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DS_C3156CCF6 Traes_7DS_C3156CCF6 |
ta_iwgsc_7ds_v1_3931405 | 4321 | 7922 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DS_C3156CCF6.1 Traes_7DS_C3156CCF6.1 PAC:31881364 |
High | No | 1702 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -28.261 AMFE: -0.616 GC content %: 45.887 | |
| Taestivum_Traes_7DS_C3156CCF6.10 Traes_7DS_C3156CCF6.10 PAC:31881373 |
High | No | 409 | Get ORF Coding potential... Type: noncoding Potential: -1.380 Folding energies... MFEI: -21.369 AMFE: -0.662 GC content %: 32.274 | |
| Taestivum_Traes_7DS_C3156CCF6.2 Traes_7DS_C3156CCF6.2 PAC:31881365 |
High | No | 1179 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -30.297 AMFE: -0.590 GC content %: 51.315 | |
| Taestivum_Traes_7DS_C3156CCF6.3 Traes_7DS_C3156CCF6.3 PAC:31881366 |
High | No | 1157 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -30.441 AMFE: -0.592 GC content %: 51.426 | |
| Taestivum_Traes_7DS_C3156CCF6.5 Traes_7DS_C3156CCF6.5 PAC:31881368 |
High | No | 1542 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -28.145 AMFE: -0.625 GC content %: 45.006 | |
| Taestivum_Traes_7DS_C3156CCF6.6 Traes_7DS_C3156CCF6.6 PAC:31881371 |
High | No | 1023 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -30.479 AMFE: -0.602 GC content %: 50.635 | |
| Taestivum_Traes_7DS_C3156CCF6.7 Traes_7DS_C3156CCF6.7 PAC:31881369 |
High | No | 1062 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -29.755 AMFE: -0.582 GC content %: 51.130 | |
| Taestivum_Traes_7DS_C3156CCF6.8 Traes_7DS_C3156CCF6.8 PAC:31881370 |
High | No | 1540 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -27.883 AMFE: -0.620 GC content %: 45.000 | |
| Taestivum_Traes_7DS_C3156CCF6.9 Traes_7DS_C3156CCF6.9 PAC:31881372 |
High | No | 737 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -27.761 AMFE: -0.588 GC content %: 47.218 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
