GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DS_C316A2F47 Traes_7DS_C316A2F47	ta_iwgsc_7ds_v1_3944546	1083	5352	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DS_C316A2F47.2 Traes_7DS_C316A2F47.2 PAC:31858508	High	No	1206		Get ORF Coding potential... Type: noncoding Potential: -1.436 Folding energies... MFEI: -26.053 AMFE: -0.626 GC content %: 41.625
Taestivum_Traes_7DS_C316A2F47.3 Traes_7DS_C316A2F47.3 PAC:31858509	High	No	1270		Get ORF Coding potential... Type: noncoding Potential: -1.457 Folding energies... MFEI: -26.913 AMFE: -0.625 GC content %: 43.071
Taestivum_Traes_7DS_C316A2F47.4 Traes_7DS_C316A2F47.4 PAC:31858510	High	No	700		Get ORF Coding potential... Type: noncoding Potential: -1.442 Folding energies... MFEI: -24.214 AMFE: -0.601 GC content %: 40.286

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).