GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DS_CEA53BF661 Traes_7DS_CEA53BF661	ta_iwgsc_7ds_v1_3917012	1	435	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DS_CEA53BF661.1 Traes_7DS_CEA53BF661.1 PAC:31823571	Low	No	435		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -30.414 AMFE: -0.497 GC content %: 61.149
Taestivum_Traes_7DS_CEA53BF661.2 Traes_7DS_CEA53BF661.2 PAC:31823570	Low	No	369		Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -34.092 AMFE: -0.540 GC content %: 63.144

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).