GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DS_D36E1F640 Traes_7DS_D36E1F640	ta_iwgsc_7ds_v1_3897803	1044	2964	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DS_D36E1F640.1 Traes_7DS_D36E1F640.1 PAC:31828424	Low	No	479		Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -27.474 AMFE: -0.606 GC content %: 45.303
Taestivum_Traes_7DS_D36E1F640.2 Traes_7DS_D36E1F640.2 PAC:31828425	High	No	829		Get ORF Coding potential... Type: noncoding Potential: -1.362 Folding energies... MFEI: -21.725 AMFE: -0.572 GC content %: 37.998

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).