Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG000381 Thecc1EG000381 |
scaffold_1 | 1559830 | 1564041 | Phytozome | v1.1 | Theobroma_cacao | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG000381t4 Thecc1EG000381t4 PAC:27433543 |
Low | No | 691 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -25.210 AMFE: -0.595 GC content %: 42.402 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG000381t4 | SwissProt | 2015-06-01 | Q54TC5 | 4.0e-15 |