Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG004170 Thecc1EG004170 |
scaffold_1 | 29960215 | 29968838 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG004170t1 Thecc1EG004170t1 PAC:27432439 |
Low | No | 1066 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -23.462 AMFE: -0.611 GC content %: 38.368 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG004170t1 | RepBase (RepeatMasker) | 2014-01-31 | Copia-63_GM-I |