Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG008183 Thecc1EG008183 |
scaffold_2 | 11684561 | 11686010 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG008183t1 Thecc1EG008183t1 PAC:27462644 |
Low | No | 429 | Get ORF Coding potential... Type: noncoding Potential: -0.025 Folding energies... MFEI: -27.226 AMFE: -0.559 GC content %: 48.718 | |
Tcacao_Thecc1EG008183t2 Thecc1EG008183t2 PAC:27462643 |
Low | No | 697 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -25.093 AMFE: -0.583 GC content %: 43.042 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG008183t2 | SwissProt | 2015-06-01 | Q93ZJ3 | 3.0e-13 |
Tcacao_Thecc1EG008183t1 | SwissProt | 2015-06-01 | Q93ZJ3 | 5.0e-14 |