GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Tcacao_Thecc1EG010330 Thecc1EG010330	scaffold_2	32605296	32608072	Phytozome	v1.1	Theobroma_cacao	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Tcacao_Thecc1EG010330t1 Thecc1EG010330t1 PAC:27461723	High	No	568		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -24.842 AMFE: -0.585 GC content %: 42.430
Tcacao_Thecc1EG010330t2 Thecc1EG010330t2 PAC:27461724	High	No	494		Get ORF Coding potential... Type: noncoding Potential: -0.633 Folding energies... MFEI: -22.935 AMFE: -0.540 GC content %: 42.510
Tcacao_Thecc1EG010330t3 Thecc1EG010330t3 PAC:27461722	High	No	449		Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -24.499 AMFE: -0.564 GC content %: 43.430

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).