Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG022137 Thecc1EG022137 |
scaffold_5 | 2795812 | 2802317 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG022137t1 Thecc1EG022137t1 PAC:27423787 |
Low | No | 1118 | Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -21.261 AMFE: -0.641 GC content %: 33.184 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG022137t1 | RepBase (RepeatMasker) | 2014-01-31 | hAT-1_STu |