Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG023367 Thecc1EG023367 |
scaffold_5 | 13466151 | 13471369 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG023367t1 Thecc1EG023367t1 PAC:27421741 |
Low | No | 1335 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -30.464 AMFE: -0.847 GC content %: 35.955 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG023367t1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-2_TC-I |