Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG024993 Thecc1EG024993 |
scaffold_5 | 29953739 | 29959295 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG024993t1 Thecc1EG024993t1 PAC:27423254 |
Low | No | 381 | Get ORF Coding potential... Type: noncoding Potential: -0.681 Folding energies... MFEI: -22.100 AMFE: -0.561 GC content %: 39.370 | |
Tcacao_Thecc1EG024993t2 Thecc1EG024993t2 PAC:27423255 |
Low | No | 321 | Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -23.240 AMFE: -0.602 GC content %: 38.629 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG024993t1 | SwissProt | 2015-06-01 | P82723 | 8.0e-9 |
Tcacao_Thecc1EG024993t2 | SwissProt | 2015-06-01 | P82723 | 9.0e-8 |