Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG026849 Thecc1EG026849 |
scaffold_5 | 40293850 | 40295174 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG026849t1 Thecc1EG026849t1 PAC:27424979 |
Low | Yes | 1151 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -28.556 AMFE: -0.704 GC content %: 40.573 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG026849t1 | Rfam | 11.0 | MIR2118 | 3.2e-5 |