Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG030237 Thecc1EG030237 |
scaffold_6 | 26343201 | 26344098 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG030237t1 Thecc1EG030237t1 PAC:27438945 |
High | No | 543 | Get ORF Coding potential... Type: noncoding Potential: -0.313 Folding energies... MFEI: -23.407 AMFE: -0.548 GC content %: 42.726 | |
Tcacao_Thecc1EG030237t2 Thecc1EG030237t2 PAC:27438946 |
High | No | 506 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -23.063 AMFE: -0.548 GC content %: 42.095 |