Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG030820 Thecc1EG030820 |
scaffold_7 | 1499694 | 1506479 | Phytozome | v1.1 | Theobroma_cacao | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG030820t2 Thecc1EG030820t2 PAC:27444169 |
Low | No | 627 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -29.011 AMFE: -0.650 GC content %: 44.657 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG030820t2 | SwissProt | 2015-06-01 | O32107 | 2.0e-10 |