Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG038156 Thecc1EG038156 |
scaffold_9 | 7379853 | 7382416 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG038156t1 Thecc1EG038156t1 PAC:27428222 |
Low | No | 880 | Get ORF Coding potential... Type: noncoding Potential: -0.586 Folding energies... MFEI: -19.920 AMFE: -0.607 GC content %: 32.841 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG038156t1 | RepBase (RepeatMasker) | 2014-01-31 | TONT2-I_PV |