Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Tcacao_Thecc1EG040333 Thecc1EG040333 |
scaffold_9 | 29018392 | 29020299 | Phytozome | v1.1 | Theobroma_cacao | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Tcacao_Thecc1EG040333t1 Thecc1EG040333t1 PAC:27426769 |
Low | No | 1390 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -28.468 AMFE: -0.717 GC content %: 39.712 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tcacao_Thecc1EG040333t1 | SwissProt | 2015-06-01 | P92519 | 5.0e-7 |
Tcacao_Thecc1EG040333t1 | RepBase (RepeatMasker) | 2014-01-31 | RETROFIT_I-int |