GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Tcacao_Thecc1EG041122 Thecc1EG041122	scaffold_9	35609690	35612090	Phytozome	v1.1	Theobroma_cacao	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Tcacao_Thecc1EG041122t1 Thecc1EG041122t1 PAC:27427799	High	No	594		Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -23.081 AMFE: -0.618 GC content %: 37.374
Tcacao_Thecc1EG041122t2 Thecc1EG041122t2 PAC:27427800	High	No	551		Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -23.593 AMFE: -0.631 GC content %: 37.387

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).