GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Tcacao_Thecc1EG047076 Thecc1EG047076	scaffold_8	5740312	5741830	Phytozome	v1.1	Theobroma_cacao	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Tcacao_Thecc1EG047076t1 Thecc1EG047076t1 PAC:27457274	High	No	560		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -25.518 AMFE: -0.619 GC content %: 41.250
Tcacao_Thecc1EG047076t2 Thecc1EG047076t2 PAC:27457275	High	No	332		Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -24.880 AMFE: -0.543 GC content %: 45.783

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).