GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Vcarteri_Vocar.0001s0254 Vocar.0001s0254	scaffold_1	1906037	1907062	Phytozome	v2.1	Volvox_carteri	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Vcarteri_Vocar.0001s0254.1 Vocar.0001s0254.1 PAC:32885096	High	No	769		Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.815 AMFE: -0.583 GC content %: 47.724
Vcarteri_Vocar.0001s0254.2 Vocar.0001s0254.2 PAC:32885097	High	No	765		Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -27.869 AMFE: -0.586 GC content %: 47.582

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).