GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Vcarteri_Vocar.0001s0470 Vocar.0001s0470	scaffold_1	3701094	3702157	Phytozome	v2.1	Volvox_carteri	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Vcarteri_Vocar.0001s0470.1 Vocar.0001s0470.1 PAC:32885591	Low	Yes	746		Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -35.456 AMFE: -0.692 GC content %: 51.206

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).