GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Vcarteri_Vocar.0001s1431 Vocar.0001s1431	scaffold_1	10906906	10907882	Phytozome	v2.1	Volvox_carteri	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Vcarteri_Vocar.0001s1431.1 Vocar.0001s1431.1 PAC:32884289	Low	Yes	213		Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -51.315 AMFE: -0.744 GC content %: 69.014

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).