GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Vcarteri_Vocar.0038s0015 Vocar.0038s0015	scaffold_38	204256	205418	Phytozome	v2.1	Volvox_carteri	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Vcarteri_Vocar.0038s0015.1 Vocar.0038s0015.1 PAC:32887695	Low	Yes	1163		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -36.217 AMFE: -0.703 GC content %: 51.505

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).