Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Vvinifera_GSVIVG01005165001 GSVIVG01005165001 |
chrUn | 18887231 | 18888593 | Phytozome | Genoscope.12X | Vitis_vinifera | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Vvinifera_GSVIVT01005165001 GSVIVT01005165001 PAC:17819378 |
Low | No | 1363 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.349 AMFE: -0.706 GC content %: 40.132 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Vvinifera_GSVIVT01005165001 | RepBase (RepeatMasker) | 2014-01-31 | Copia-47_VV-I |