GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Vvinifera_GSVIVG01010549001 GSVIVG01010549001	chr16	16729263	16732006	Phytozome	Genoscope.12X	Vitis_vinifera	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Vvinifera_GSVIVT01010549001 GSVIVT01010549001 PAC:17822681	High	No	293		Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -22.628 AMFE: -0.562 GC content %: 40.273

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).