Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Vvinifera_GSVIVG01012075001 GSVIVG01012075001 |
chr1 | 1620551 | 1621335 | Phytozome | Genoscope.12X | Vitis_vinifera | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Vvinifera_GSVIVT01012075001 GSVIVT01012075001 PAC:17823796 |
Low | No | 345 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -19.855 AMFE: -0.628 GC content %: 31.594 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Vvinifera_GSVIVT01012075001 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia24I |