Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Vvinifera_GSVIVG01021106001 GSVIVG01021106001 |
chr10 | 1483255 | 1486078 | Phytozome | Genoscope.12X | Vitis_vinifera | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Vvinifera_GSVIVT01021106001 GSVIVT01021106001 PAC:17830290 |
Low | No | 2069 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -23.001 AMFE: -0.621 GC content %: 37.023 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Vvinifera_GSVIVT01021106001 | SwissProt | 2015-06-01 | Q93ZJ3 | 3.0e-10 |