Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Vvinifera_GSVIVG01022727001 GSVIVG01022727001 |
chr2 | 15684005 | 15686062 | Phytozome | Genoscope.12X | Vitis_vinifera | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Vvinifera_GSVIVT01022727001 GSVIVT01022727001 PAC:17831454 |
Low | No | 660 | Get ORF Coding potential... Type: noncoding Potential: -0.100 Folding energies... MFEI: -22.712 AMFE: -0.657 GC content %: 34.545 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Vvinifera_GSVIVT01022727001 | SwissProt | 2015-06-01 | Q9XEE9 | 3.0e-10 |
Vvinifera_GSVIVT01022727001 | RepBase (RepeatMasker) | 2014-01-31 | ENSPM2_VV |