Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Vvinifera_GSVIVG01031680001 GSVIVG01031680001 |
chr5 | 20109283 | 20118389 | Phytozome | Genoscope.12X | Vitis_vinifera | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Vvinifera_GSVIVT01031680001 GSVIVT01031680001 PAC:17837802 |
Low | No | 552 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -27.518 AMFE: -0.610 GC content %: 45.109 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Vvinifera_GSVIVT01031680001 | SwissProt | 2015-06-01 | Q9LXV0 | 2.0e-17 |
Vvinifera_GSVIVT01031680001 | RepBase (RepeatMasker) | 2014-01-31 | Copia-72_VV-LTR |