GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmarina_Zosma102g00190 Zosma102g00190	scaffold_102	273750	274235	Phytozome	v2.2	Zostera_marina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmarina_Zosma102g00190.1 Zosma102g00190.1 PAC:33168626	High	No	357		Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -25.518 AMFE: -0.580 GC content %: 43.978

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).