GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmarina_Zosma171g00430 Zosma171g00430	scaffold_171	262964	263557	Phytozome	v2.2	Zostera_marina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmarina_Zosma171g00430.1 Zosma171g00430.1 PAC:33185138	High	No	594		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -18.955 AMFE: -0.454 GC content %: 41.751

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).