Gene

Zmarina Zosma27g00580

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Zmarina_Zosma27g00580
Zosma27g00580
scaffold_27 275531 276314 Phytozome v2.2 Zostera_marina
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Zmarina_Zosma27g00580.1
Zosma27g00580.1
PAC:33179814
High No 784
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -23.584 AMFE: -0.571
GC content
%: 41.327


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Zosma27g00580.png