GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmarina_Zosma53g01020 Zosma53g01020	scaffold_53	707919	709855	Phytozome	v2.2	Zostera_marina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmarina_Zosma53g01020.1 Zosma53g01020.1 PAC:33174896	High	No	1937		Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -20.645 AMFE: -0.653 GC content %: 31.595

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).