GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmarina_Zosma86g00200 Zosma86g00200	scaffold_86	80052	84041	Phytozome	v2.2	Zostera_marina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmarina_Zosma86g00200.1 Zosma86g00200.1 PAC:33181762	High	No	1289		Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -23.406 AMFE: -0.657 GC content %: 35.609

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).