Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G002796 GRMZM2G002796 |
6 | 38641354 | 38641877 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G002796_T01 GRMZM2G002796_T01 PAC:31026064 |
Low | No | 524 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -24.466 AMFE: -0.575 GC content %: 42.557 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G002796_T01 | SwissProt | 2015-06-01 | O23702 | 2.0e-13 |
Zmays_GRMZM2G002796_T01 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-190_ZM-I |