GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G003937 GRMZM2G003937	2	208869363	208870921	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G003937_T01 GRMZM2G003937_T01 PAC:30975122	Low	Yes	800		Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -36.075 AMFE: -0.619 GC content %: 58.250
Zmays_GRMZM2G003937_T03 GRMZM2G003937_T03 PAC:30975124	Low	Yes	729		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -34.225 AMFE: -0.597 GC content %: 57.339
Zmays_GRMZM2G003937_T04 GRMZM2G003937_T04 PAC:30975123	Low	Yes	866		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -39.538 AMFE: -0.631 GC content %: 62.702

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).