Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G008108 GRMZM2G008108 |
7 | 73538893 | 73547580 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G008108_T01 GRMZM2G008108_T01 PAC:30998887 |
Low | Yes | 1859 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -29.521 AMFE: -0.708 GC content %: 41.689 | |
Zmays_GRMZM2G008108_T02 GRMZM2G008108_T02 PAC:30998888 |
Low | No | 1938 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -27.642 AMFE: -0.694 GC content %: 39.835 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G008108_T02 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-207_ZM-LTR | |
Zmays_GRMZM2G008108_T01 | Rfam | 11.0 | mir-875 | 0.0059 |
Zmays_GRMZM2G008108_T01 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-207_ZM-LTR |