Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G013677 GRMZM2G013677 |
6 | 141659598 | 141663820 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G013677_T01 GRMZM2G013677_T01 PAC:31025502 |
Low | No | 1159 | Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -30.526 AMFE: -0.664 GC content %: 45.988 | |
Zmays_GRMZM2G013677_T02 GRMZM2G013677_T02 PAC:31025501 |
High | No | 772 | Get ORF Coding potential... Type: noncoding Potential: -0.542 Folding energies... MFEI: -32.137 AMFE: -0.649 GC content %: 49.482 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G013677_T01 | RepBase (RepeatMasker) | 2014-01-31 | TE-3-1_ZM |