GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G016583 GRMZM2G016583	4	27614715	27621352	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G016583_T02 GRMZM2G016583_T02 PAC:31050035	High	No	447		Get ORF Coding potential... Type: noncoding Potential: -0.584 Folding energies... MFEI: -31.163 AMFE: -0.663 GC content %: 46.980
Zmays_GRMZM2G016583_T03 GRMZM2G016583_T03 PAC:31050034	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.249 Folding energies... MFEI: -23.934 AMFE: -0.650 GC content %: 36.842

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).