Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G022730 GRMZM2G022730 |
9 | 18620522 | 18623655 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G022730_T01 GRMZM2G022730_T01 PAC:31036814 |
High | No | 492 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -23.049 AMFE: -0.610 GC content %: 37.805 | |
Zmays_GRMZM2G022730_T02 GRMZM2G022730_T02 PAC:31036815 |
Low | Yes | 387 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -24.961 AMFE: -0.582 GC content %: 42.894 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G022730_T02 | SwissProt | 2015-06-01 | Q75JQ1 | 4.0e-4 |
Zmays_GRMZM2G022730_T02 | Rfam | 11.0 | MIR169_2 | 0.0033 |