GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G025552 GRMZM2G025552	1	5625359	5627752	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G025552_T01 GRMZM2G025552_T01 PAC:31008220	High	No	716		Get ORF Coding potential... Type: noncoding Potential: -0.309 Folding energies... MFEI: -34.330 AMFE: -0.672 GC content %: 51.117
Zmays_GRMZM2G025552_T02 GRMZM2G025552_T02 PAC:31008223	High	No	680		Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -26.382 AMFE: -0.690 GC content %: 38.235
Zmays_GRMZM2G025552_T03 GRMZM2G025552_T03 PAC:31008221	High	No	593		Get ORF Coding potential... Type: noncoding Potential: -0.667 Folding energies... MFEI: -32.125 AMFE: -0.595 GC content %: 53.963
Zmays_GRMZM2G025552_T04 GRMZM2G025552_T04 PAC:31008222	High	No	254		Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -37.441 AMFE: -0.576 GC content %: 64.961

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).