Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G027241 GRMZM2G027241 |
10 | 114715907 | 114718464 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G027241_T03 GRMZM2G027241_T03 PAC:31001675 |
Low | Yes | 1043 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -33.250 AMFE: -0.673 GC content %: 49.377 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G027241_T03 | Rfam | 11.0 | MIR1122 | 2.0e-12 |
Zmays_GRMZM2G027241_T03 | RepBase (RepeatMasker) | 2014-01-31 | DNA-TA-1_ZM |