Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G032847 GRMZM2G032847 |
6 | 158057609 | 158060000 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G032847_T06 GRMZM2G032847_T06 PAC:31026971 |
Low | No | 1217 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -31.701 AMFE: -0.644 GC content %: 49.219 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G032847_T06 | SwissProt | 2015-06-01 | Q84J78 | 6.0e-4 |
Zmays_GRMZM2G032847_T06 | RepBase (RepeatMasker) | 2014-01-31 | hAT-N17_SBi |