Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G041806 GRMZM2G041806 |
7 | 23662116 | 23663374 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G041806_T01 GRMZM2G041806_T01 PAC:30995522 |
Low | No | 529 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -30.972 AMFE: -0.585 GC content %: 52.930 | |
Zmays_GRMZM2G041806_T02 GRMZM2G041806_T02 PAC:30995521 |
Low | Yes | 594 | Get ORF Coding potential... Type: noncoding Potential: -1.534 Folding energies... MFEI: -38.552 AMFE: -0.643 GC content %: 59.933 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G041806_T01 | RepBase (RepeatMasker) | 2014-01-31 | PREM1A_ZM_LTR |