Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G045688 GRMZM2G045688 |
1 | 220253400 | 220256489 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G045688_T02 GRMZM2G045688_T02 PAC:31011000 |
High | No | 2247 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -25.990 AMFE: -0.678 GC content %: 38.318 | |
Zmays_GRMZM2G045688_T04 GRMZM2G045688_T04 PAC:31011001 |
Low | No | 821 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -25.907 AMFE: -0.627 GC content %: 41.291 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G045688_T04 | RepBase (RepeatMasker) | 2014-01-31 | hAT-25_ZM |